| Title: | Ensembl Annotation Tables |
|---|---|
| Description: | Provides tables for converting and annotating Ensembl Gene IDs. |
| Authors: | Stephen Turner [aut, cre], Michael J. Steinbaugh [ctb], Aaron Wolen [ctb] |
| Maintainer: | Stephen Turner <[email protected]> |
| License: | GPL-3 |
| Version: | 0.3.0 |
| Built: | 2026-10-20 09:10:59 UTC |
| Source: | https://github.com/stephenturner/annotables |
Provides tables for converting and annotating Ensembl Gene IDs.
Maintainer: Stephen Turner [email protected]
Authors:
Stephen Turner [email protected]
Other contributors:
Michael J. Steinbaugh [email protected] [contributor]
Aaron Wolen [email protected] [contributor]
Useful links:
Report bugs at https://github.com/stephenturner/annotables/issues
Fruitfly (Drosophila melanogaster) annotations based on genome assembly BDGP654 from Ensembl.
bdgp654bdgp654
An object of class tbl_df (inherits from tbl, data.frame) with 28759 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/drosophila_melanogaster
head(bdgp654)head(bdgp654)
Lookup table for converting Fruitfly (Drosophila melanogaster) Ensembl transcript IDs to gene IDs based on genome assembly BDGP654 from Ensembl.
bdgp654_tx2genebdgp654_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 41600 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/drosophila_melanogaster
head(bdgp654_tx2gene)head(bdgp654_tx2gene)
Ensembl version used for build
ensembl_versionensembl_version
An object of class character of length 1.
ensembl_versionensembl_version
Chicken (Gallus gallus) annotations based on genome assembly GRCG7B from Ensembl.
grcg7bgrcg7b
An object of class tbl_df (inherits from tbl, data.frame) with 34332 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/gallus_gallus
head(grcg7b)head(grcg7b)
Lookup table for converting Chicken (Gallus gallus) Ensembl transcript IDs to gene IDs based on genome assembly GRCG7B from Ensembl.
grcg7b_tx2genegrcg7b_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 72689 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/gallus_gallus
head(grcg7b_tx2gene)head(grcg7b_tx2gene)
Human (Homo sapiens) annotations based on genome assembly GRCH37 from Ensembl.
grch37grch37
An object of class tbl_df (inherits from tbl, data.frame) with 66978 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/homo_sapiens
head(grch37)head(grch37)
Lookup table for converting Human (Homo sapiens) Ensembl transcript IDs to gene IDs based on genome assembly GRCH37 from Ensembl.
grch37_tx2genegrch37_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 215170 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/homo_sapiens
head(grch37_tx2gene)head(grch37_tx2gene)
Human (Homo sapiens) annotations based on genome assembly GRCH38 from Ensembl.
grch38grch38
An object of class tbl_df (inherits from tbl, data.frame) with 91743 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/homo_sapiens
head(grch38)head(grch38)
Lookup table for converting Human (Homo sapiens) Ensembl transcript IDs to gene IDs based on genome assembly GRCH38 from Ensembl.
grch38_tx2genegrch38_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 670670 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/homo_sapiens
head(grch38_tx2gene)head(grch38_tx2gene)
Mouse (Mus musculus) annotations based on genome assembly GRCM39 from Ensembl.
grcm39grcm39
An object of class tbl_df (inherits from tbl, data.frame) with 78718 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/mus_musculus
head(grcm39)head(grcm39)
Lookup table for converting Mouse (Mus musculus) Ensembl transcript IDs to gene IDs based on genome assembly GRCM39 from Ensembl.
grcm39_tx2genegrcm39_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 481956 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/mus_musculus
head(grcm39_tx2gene)head(grcm39_tx2gene)
Rat (Rattus norvegicus) annotations based on genome assembly GRCR8 from Ensembl.
grcr8grcr8
An object of class tbl_df (inherits from tbl, data.frame) with 57760 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/rattus_norvegicus
head(grcr8)head(grcr8)
Lookup table for converting Rat (Rattus norvegicus) Ensembl transcript IDs to gene IDs based on genome assembly GRCR8 from Ensembl.
grcr8_tx2genegrcr8_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 95472 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/rattus_norvegicus
head(grcr8_tx2gene)head(grcr8_tx2gene)
Zebrafish (Danio rerio) annotations based on genome assembly GRCZ11 from Ensembl.
grcz11grcz11
An object of class tbl_df (inherits from tbl, data.frame) with 92137 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/danio_rerio
head(grcz11)head(grcz11)
Lookup table for converting Zebrafish (Danio rerio) Ensembl transcript IDs to gene IDs based on genome assembly GRCZ11 from Ensembl.
grcz11_tx2genegrcz11_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 65905 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/danio_rerio
head(grcz11_tx2gene)head(grcz11_tx2gene)
Macaque (Macaca mulatta) annotations based on genome assembly MMUL10 from Ensembl.
mmul10mmul10
An object of class tbl_df (inherits from tbl, data.frame) with 37169 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/macaca_mulatta
head(mmul10)head(mmul10)
Lookup table for converting Macaque (Macaca mulatta) Ensembl transcript IDs to gene IDs based on genome assembly MMUL10 from Ensembl.
mmul10_tx2genemmul10_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 64228 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/macaca_mulatta
head(mmul10_tx2gene)head(mmul10_tx2gene)
Dog (Canis lupus familiaris) annotations based on genome assembly ROSCFAM1 from Ensembl.
roscfam1roscfam1
An object of class tbl_df (inherits from tbl, data.frame) with 34012 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/canis_lupus familiaris
head(roscfam1)head(roscfam1)
Lookup table for converting Dog (Canis lupus familiaris) Ensembl transcript IDs to gene IDs based on genome assembly ROSCFAM1 from Ensembl.
roscfam1_tx2generoscfam1_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 55335 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/canis_lupus familiaris
head(roscfam1_tx2gene)head(roscfam1_tx2gene)
Pig (Sus scrofa) annotations based on genome assembly SSCROFA111 from Ensembl.
sscrofa111sscrofa111
An object of class tbl_df (inherits from tbl, data.frame) with 35819 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
head(sscrofa111)head(sscrofa111)
Lookup table for converting Pig (Sus scrofa) Ensembl transcript IDs to gene IDs based on genome assembly SSCROFA111 from Ensembl.
sscrofa111_tx2genesscrofa111_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 60440 rows and 2 columns.
Variables:
enstxp
ensgene
head(sscrofa111_tx2gene)head(sscrofa111_tx2gene)
Roundworm (Caenorhabditis elegans) annotations based on genome assembly WBCEL235 from Ensembl.
wbcel235wbcel235
An object of class tbl_df (inherits from tbl, data.frame) with 46926 rows and 9 columns.
Variables:
ensgene
entrez
symbol
chr
start
end
strand
biotype
description
http://ensembl.org/caenorhabditis_elegans
head(wbcel235)head(wbcel235)
Lookup table for converting Roundworm (Caenorhabditis elegans) Ensembl transcript IDs to gene IDs based on genome assembly WBCEL235 from Ensembl.
wbcel235_tx2genewbcel235_tx2gene
An object of class tbl_df (inherits from tbl, data.frame) with 60000 rows and 2 columns.
Variables:
enstxp
ensgene
http://ensembl.org/caenorhabditis_elegans
head(wbcel235_tx2gene)head(wbcel235_tx2gene)