{
  "_id": "6a1ee7a3b401979e7341186f",
  "Package": "leo.basic",
  "Title": "leo.basic",
  "Version": "0.0.2",
  "Authors@R": "person(\"Ao\", \"Lu\", email = \"luao@stu.cqmu.edu.cn\", role = c(\"aut\", \"cre\"))",
  "Description": "Basic function for leo universe.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/testthat/edition": "3",
  "Remotes": [
    "github::showteeth/ggpie"
  ],
  "Repository": "https://laleoarrow.r-universe.dev",
  "Date/Publication": "2026-05-19 16:05:14 UTC",
  "RemoteUrl": "https://github.com/laleoarrow/leo.basic",
  "RemoteRef": "HEAD",
  "RemoteSha": "9625ce5012db7f15c6b43b623243566cf5cce75a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-19 17:01:39 UTC",
    "User": "root"
  },
  "Author": "Ao Lu [aut, cre]",
  "Maintainer": "Ao Lu <luao@stu.cqmu.edu.cn>",
  "MD5sum": "b423d6cb7dd330bb77e2c134b98a2b53",
  "_user": "laleoarrow",
  "_type": "src",
  "_file": "leo.basic_0.0.2.tar.gz",
  "_fileid": "cdf9cfcb16c3460dbb9804c8fa04308bb9bc7b521b124cdaf9b7f58d179508f5",
  "_filesize": 185620,
  "_sha256": "cdf9cfcb16c3460dbb9804c8fa04308bb9bc7b521b124cdaf9b7f58d179508f5",
  "_created": "2026-05-19T17:01:39.000Z",
  "_published": "2026-06-02T14:24:35.794Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79093202937,
      "time": 294,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7090236219"
    },
    {
      "job": 79093203123,
      "time": 285,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7090232649"
    },
    {
      "job": 79093203066,
      "time": 181,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7090248093"
    },
    {
      "job": 79093202720,
      "time": 153,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7090248488"
    },
    {
      "job": 79093202581,
      "time": 309,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7090125341"
    },
    {
      "job": 79093201725,
      "time": 255,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7360491595"
    },
    {
      "job": 79093202913,
      "time": 249,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7090219851"
    },
    {
      "job": 79093204290,
      "time": 215,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7090207049"
    },
    {
      "job": 79093203529,
      "time": 204,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7090202661"
    }
  ],
  "_buildurl": "https://github.com/r-universe/laleoarrow/actions/runs/26112224860",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/laleoarrow/leo.basic",
  "_commit": {
    "id": "9625ce5012db7f15c6b43b623243566cf5cce75a",
    "author": "Ao Lu <luao@stu.cqmu.edu.cn>",
    "committer": "Ao Lu <luao@stu.cqmu.edu.cn>",
    "message": "Improve shape code reference\n",
    "time": 1779206714
  },
  "_maintainer": {
    "name": "Ao Lu",
    "email": "luao@stu.cqmu.edu.cn",
    "login": "laleoarrow",
    "uuid": 127536391
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "coin",
      "role": "Imports"
    },
    {
      "package": "dplyr",
      "role": "Imports"
    },
    {
      "package": "ggbeeswarm",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Imports"
    },
    {
      "package": "ggprism",
      "role": "Imports"
    },
    {
      "package": "ggsci",
      "role": "Imports"
    },
    {
      "package": "glue",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "magrittr",
      "role": "Imports"
    },
    {
      "package": "nortest",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "scales",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "tibble",
      "role": "Imports"
    },
    {
      "package": "clusterProfiler",
      "role": "Suggests"
    },
    {
      "package": "data.table",
      "role": "Suggests"
    },
    {
      "package": "ggpie",
      "role": "Suggests"
    },
    {
      "package": "ggrastr",
      "role": "Suggests"
    },
    {
      "package": "org.Hs.eg.db",
      "role": "Suggests"
    },
    {
      "package": "pak",
      "role": "Suggests"
    },
    {
      "package": "patchwork",
      "role": "Suggests"
    },
    {
      "package": "ReactomePA",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "vroom",
      "role": "Suggests"
    }
  ],
  "_owner": "laleoarrow",
  "_selfowned": true,
  "_usedby": 2,
  "_updates": [
    {
      "week": "2025-21",
      "n": 4
    },
    {
      "week": "2025-26",
      "n": 1
    },
    {
      "week": "2025-29",
      "n": 1
    },
    {
      "week": "2025-33",
      "n": 2
    },
    {
      "week": "2025-34",
      "n": 1
    },
    {
      "week": "2025-37",
      "n": 1
    },
    {
      "week": "2025-39",
      "n": 2
    },
    {
      "week": "2026-06",
      "n": 7
    },
    {
      "week": "2026-07",
      "n": 10
    },
    {
      "week": "2026-21",
      "n": 3
    }
  ],
  "_tags": [],
  "_topics": [
    "bioinformatics",
    "genetics"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "laleoarrow",
      "count": 34,
      "uuid": 127536391
    }
  ],
  "_userbio": {
    "uuid": 127536391,
    "type": "user",
    "name": "Ao Lu"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/leo.basic"
  },
  "_devurl": "https://github.com/laleoarrow/leo.basic",
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/leo.basic.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "format_gene_str2vec",
    "format_geneList",
    "GSEA_GO",
    "GSEA_KEGG",
    "GSEA_MKEGG",
    "GSEA_Reactome",
    "install_deps",
    "install_local",
    "leo_discrete_color",
    "leo_enrich",
    "leo_log",
    "leo_message",
    "leo_more_color",
    "leo_permutation_test",
    "leo_stop",
    "leo_theme",
    "leo_time_elapsed",
    "ORA_GO",
    "ORA_KEGG",
    "ORA_MKEGG",
    "ORA_Reactome",
    "plot_group_numbers",
    "plot_pie",
    "plot_prism_lollipop",
    "prep_GSEA_geneList",
    "put_legend_inside",
    "rasterize_layers",
    "recode_by_map",
    "set_proxy",
    "vd"
  ],
  "_help": [
    {
      "page": "enrichment_helper",
      "title": "Enrichment helpers",
      "topics": [
        "enrichment_helper",
        "format_geneList",
        "format_gene_str2vec",
        "prep_GSEA_geneList"
      ]
    },
    {
      "page": "enrichment_individual",
      "title": "Enrichment wrappers (individual)",
      "topics": [
        "enrichment_individual",
        "GSEA_GO",
        "GSEA_KEGG",
        "GSEA_MKEGG",
        "GSEA_Reactome",
        "ORA_GO",
        "ORA_KEGG",
        "ORA_MKEGG",
        "ORA_Reactome"
      ]
    },
    {
      "page": "install_deps",
      "title": "Install LEO package dependencies",
      "topics": [
        "install_deps"
      ]
    },
    {
      "page": "install_local",
      "title": "Install local package",
      "topics": [
        "install_local"
      ]
    },
    {
      "page": "leo_discrete_color",
      "title": "Generate a discrete color palette (expanded from a base panel)",
      "topics": [
        "leo_discrete_color"
      ]
    },
    {
      "page": "leo_enrich",
      "title": "Enrichment analysis (Integrated)",
      "topics": [
        "leo_enrich"
      ]
    },
    {
      "page": "leo_log",
      "title": "Log messages with time stamps",
      "topics": [
        "leo_log"
      ]
    },
    {
      "page": "leo_message",
      "title": "Give messages with my color",
      "topics": [
        "leo_message"
      ]
    },
    {
      "page": "leo_more_color",
      "title": "Generate a custom colour palette",
      "topics": [
        "leo_more_color"
      ]
    },
    {
      "page": "leo_permutation_test",
      "title": "leo_permutation_test: flexible one-way permutation / rank-based testing",
      "topics": [
        "leo_permutation_test"
      ]
    },
    {
      "page": "leo_stop",
      "title": "Stop execution with formatted message",
      "topics": [
        "leo_stop"
      ]
    },
    {
      "page": "leo_theme",
      "title": "Custom ggplot2 theme",
      "topics": [
        "leo_theme"
      ]
    },
    {
      "page": "leo_time_elapsed",
      "title": "Intelligent Elapsed-Time Formatter",
      "topics": [
        "leo_time_elapsed"
      ]
    },
    {
      "page": "plot_group_numbers",
      "title": "Plot numeric values by group with jitter / beeswarm, color / shape / size mapping",
      "topics": [
        "plot_group_numbers"
      ]
    },
    {
      "page": "plot_pie",
      "title": "Plot pie/ring via ggpie with install hint",
      "topics": [
        "plot_pie"
      ]
    },
    {
      "page": "plot_prism_lollipop",
      "title": "Prism-style lollipop plot (grouped or single series)",
      "topics": [
        "plot_prism_lollipop"
      ]
    },
    {
      "page": "put_legend_inside",
      "title": "Put legend inside ggplot/patchwork at (0.8, 0.8) npc",
      "topics": [
        "put_legend_inside"
      ]
    },
    {
      "page": "rasterize_layers",
      "title": "Rasterize point-like layers in a ggplot object",
      "topics": [
        "rasterize_layers"
      ]
    },
    {
      "page": "recode_by_map",
      "title": "Recode a Vector Using a Two-Column Mapping Table",
      "topics": [
        "recode_by_map"
      ]
    },
    {
      "page": "set_proxy",
      "title": "Set or unset proxy",
      "topics": [
        "set_proxy"
      ]
    },
    {
      "page": "vd",
      "title": "View DataFrame with VisiData from Terminal",
      "topics": [
        "vd"
      ]
    }
  ],
  "_readme": "https://github.com/laleoarrow/leo.basic/raw/HEAD/README.md",
  "_rundeps": [
    "beeswarm",
    "cli",
    "codetools",
    "coin",
    "cpp11",
    "digest",
    "dplyr",
    "farver",
    "generics",
    "ggbeeswarm",
    "ggplot2",
    "ggprism",
    "ggsci",
    "glue",
    "gtable",
    "isoband",
    "labeling",
    "lattice",
    "libcoin",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "matrixStats",
    "modeltools",
    "multcomp",
    "mvtnorm",
    "nortest",
    "pillar",
    "pkgconfig",
    "R6",
    "RColorBrewer",
    "rlang",
    "S7",
    "sandwich",
    "scales",
    "survival",
    "TH.data",
    "tibble",
    "tidyselect",
    "utf8",
    "vctrs",
    "vipor",
    "viridisLite",
    "withr",
    "zoo"
  ],
  "_score": 3.4771212547196626,
  "_indexed": true,
  "_nocasepkg": "leo.basic",
  "_universes": [
    "laleoarrow"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-05-19T17:06:03.000Z",
      "distro": "noble",
      "commit": "9625ce5012db7f15c6b43b623243566cf5cce75a",
      "fileid": "9ad67395da9b43a83cf0115580318983c9e14889f60506c897df155d0c0a9734",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/laleoarrow/actions/runs/26112224860"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-05-19T17:05:58.000Z",
      "distro": "noble",
      "commit": "9625ce5012db7f15c6b43b623243566cf5cce75a",
      "fileid": "0cd0ccb8bab4aac649bf50b5495611abad98cf1f72ed8a5963569f5486d7710d",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/laleoarrow/actions/runs/26112224860"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-05-19T17:06:50.000Z",
      "commit": "9625ce5012db7f15c6b43b623243566cf5cce75a",
      "fileid": "b9a385fc87db4ecc9f0ecea89565bc61ed0f8e85d45ba0b8203feb5a9b70bb6b",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/laleoarrow/actions/runs/26112224860"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-05-19T17:06:58.000Z",
      "commit": "9625ce5012db7f15c6b43b623243566cf5cce75a",
      "fileid": "cb2570a27406f426e5c6035c454bb3a97efb2d91f32001710aabb43f28595d9b",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/laleoarrow/actions/runs/26112224860"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-05-19T17:05:20.000Z",
      "commit": "9625ce5012db7f15c6b43b623243566cf5cce75a",
      "fileid": "fd454acd89f1977933edfe813c7ea08d5afd9ea625f98b804e6d13d1baf67eec",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/laleoarrow/actions/runs/26112224860"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-05-19T17:04:47.000Z",
      "commit": "9625ce5012db7f15c6b43b623243566cf5cce75a",
      "fileid": "88fac5cf10b85b4517a6698b95c7c06716898a6921c06a468dda5c493e50d9d8",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/laleoarrow/actions/runs/26112224860"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-05-19T17:04:33.000Z",
      "commit": "9625ce5012db7f15c6b43b623243566cf5cce75a",
      "fileid": "c09d4d1e1cd4a1fcfbd89d4198f5fe7e5afa9925363772ed87643f18aaf568d3",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/laleoarrow/actions/runs/26112224860"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.2",
      "date": "2026-06-02T14:23:50.000Z",
      "commit": "9625ce5012db7f15c6b43b623243566cf5cce75a",
      "fileid": "58ce261592a4159e136dcaa5662a9055bfa7eecc5487ea09059842da8f9adefe",
      "status": "success",
      "buildurl": "https://github.com/r-universe/laleoarrow/actions/runs/26112224860"
    }
  ]
}